Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequel or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
Do NOT download the .zip source code. It is missing files and will not compile. This is a known flaw with git itself.
The easiest way to get started is to download a binary release.
Installing with a 'package manager' is not encouraged, but if you have no other choice:
conda install -c conda-forge -c bioconda -c defaults canu
brew install brewsci/bio/canu
Alternatively, you can use the latest unreleased version from the source code. This version has not undergone the same testing as a release and so may have unknown bugs or issues generating sub-optimal assemblies. We recommend the release version for most users.
git clone https://github.com/marbl/canu.git
cd canu/src
make -j <number of threads>
An unsupported Docker image made by Frank Förster is at https://hub.docker.com/r/greatfireball/canu/.
The quick start will get you assembling quickly, while the tutorial explains things in more detail.
Brief command line help:
../<architecture>/bin/canu
Full list of parameters:
../<architecture>/bin/canu -options
doi:10.1101/gr.215087.116
此处可能存在不合适展示的内容,页面不予展示。您可通过相关编辑功能自查并修改。
如您确认内容无涉及 不当用语 / 纯广告导流 / 暴力 / 低俗色情 / 侵权 / 盗版 / 虚假 / 无价值内容或违法国家有关法律法规的内容,可点击提交进行申诉,我们将尽快为您处理。